PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 80aa    MW: 9288.76 Da    PI: 5.4925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08540340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+   +++a +++G++ W+++a+ +   Rt++++
   XP_016490540.1  5 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 40
                     5*****************99.********9.8999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.214154IPR017884SANT domain
SMARTSM007177.1E-4250IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-11451IPR009057Homeodomain-like
PfamPF002492.1E-7541IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-6547IPR009057Homeodomain-like
CDDcd001675.20E-6640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MIGPHWSEED LTHFYQAYRK YGKDWEKVAA AVKPRTAEMV EALYIMHMAY LSLPEGTASA  60
VGLIALMTDH YCYLVWLEIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797177.19e-54PREDICTED: protein ALWAYS EARLY 3-like
RefseqXP_016490540.19e-54PREDICTED: protein ALWAYS EARLY 3-like
SwissprotQ6A3329e-32ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A0V0IP022e-40A0A0V0IP02_SOLCH; Putative ovule protein (Fragment)
TrEMBLK4DHJ08e-40K4DHJ0_SOLLC; Uncharacterized protein
STRINGSolyc12g098160.1.12e-39(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-33DNA binding